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Crohn’s Fistulas: Comprehensive Guide to Causes, Types, and Treatments

What are fistulas in Crohn’s disease. How are fistulas diagnosed and treated. Can fistulas be prevented in Crohn’s disease. What are the different types of fistulas associated with Crohn’s. How does follow-up care work after fistula treatment. What questions should patients ask their doctor about Crohn’s fistulas.

Understanding Fistulas in Crohn’s Disease

Fistulas are a common complication of Crohn’s disease, affecting up to half of all adults with this inflammatory bowel condition. These small tunnels form between two organs or between an organ and the skin surface, often due to inflammation causing sores on the intestinal wall. While they may sound alarming, understanding fistulas is crucial for effective management of Crohn’s disease.

Fistulas typically develop in the anal region for Crohn’s patients, but they can also form in the intestines, bladder, or through the bowel wall to the skin surface. In some cases, fistulas may even connect the anus and vagina. The formation of these abnormal passages can lead to various symptoms and complications, making early detection and treatment essential.

Types of Fistulas Associated with Crohn’s Disease

Several types of fistulas can occur in patients with Crohn’s disease, each with its own set of symptoms and potential complications:

  • Anal fistula: The most common type, characterized by a painful bump or boil around the anus, often with drainage of fluid or fecal matter.
  • Bowel-to-bladder fistula: Can cause frequent urinary tract infections, painful urination, and blood or cloudiness in the urine.
  • Bowel-to-vagina fistula: May result in the passage of gas or fecal matter through the vagina.
  • Bowel-to-skin fistula: Often occurs on the abdomen, causing skin irritation and increasing the risk of infection.
  • Bowel-to-bowel fistula: Connects different parts of the intestines, potentially leading to diarrhea, malnutrition, and dehydration.

Diagnosis and Imaging Techniques for Crohn’s Fistulas

Accurate diagnosis of fistulas is crucial for appropriate treatment. Healthcare providers typically use a combination of physical examination and advanced imaging techniques to identify and characterize fistulas in Crohn’s disease patients.

How are fistulas diagnosed?

Fistulas are usually diagnosed through a thorough physical examination, which may reveal visible openings or drainage around the anal area. However, to fully assess the extent and complexity of fistulas, doctors often rely on various imaging tests:

  • CT scans: Provide detailed cross-sectional images of the abdomen and pelvis
  • Ultrasounds: Offer real-time imaging of soft tissues and can help guide procedures
  • MRIs: Provide high-resolution images of soft tissues and are particularly useful for evaluating complex fistulas

These imaging techniques help doctors determine the exact location, size, and path of fistulas, which is essential for planning appropriate treatment strategies.

Treatment Options for Crohn’s Disease Fistulas

The treatment of fistulas in Crohn’s disease depends on their complexity and location. While some fistulas may respond to medical management, others may require surgical intervention.

Medical Management

For simple anal fistulas, doctors may recommend a combination of antibiotics and existing Crohn’s disease treatments, such as anti-tumor necrosis factor (anti-TNF) agents like infliximab. This approach aims to reduce inflammation and promote healing of the fistula.

Surgical Interventions

Complex anal fistulas or those involving other organs often require surgical treatment. Some common surgical options include:

  1. Seton placement: A thin surgical cord is inserted into the fistula to promote drainage and healing.
  2. Medical plug: A cone-shaped plug made from animal tissue is used to block the internal opening of the fistula.
  3. Fistulotomy: The fistula is cut open and flattened to promote healing.
  4. Ligation of the intersphincteric tract (LIFT): A procedure for complex anal fistulas that involves sealing the fistula at both ends.
  5. Medical glue: A non-surgical option where glue is injected into the fistula to seal it.

In some cases, patients may require a temporary ileostomy during the healing process after fistula surgery. This involves creating a surgical opening in the abdominal wall to allow waste to exit the body while the intestine heals.

Emerging Treatments: Stem Cell Therapy for Crohn’s Fistulas

Researchers are exploring innovative treatments for Crohn’s disease fistulas, with stem cell therapy showing promising results. This experimental approach involves injecting stem cells directly into the fistula to repair damaged cells and reduce inflammation.

Is stem cell therapy effective for treating Crohn’s fistulas?

A 2021 review published in the journal Stem Cell Research & Therapy examined 29 studies on stem cell therapy for Crohn’s fistulas. The findings indicated that patients who received stem cell injections had higher rates of healing compared to those given a placebo. However, more research is needed to fully determine the effectiveness and long-term outcomes of this treatment approach.

Post-Treatment Care and Follow-Up for Fistulas

Proper post-treatment care is essential for successful healing of fistulas and preventing recurrence. After surgical intervention, patients may be advised to follow specific care instructions:

  • Sitz baths: Soaking the affected area in warm water to promote healing and reduce discomfort
  • Stool softeners or laxatives: Maintaining soft stools to minimize irritation of the surgical site
  • Pain management: Use of prescribed pain medications or local anesthetics like lidocaine to manage post-operative discomfort

Regular follow-up appointments with healthcare providers are crucial to monitor healing progress and address any potential complications. During these visits, doctors may perform physical examinations and imaging tests to ensure proper healing of the fistula.

Preventing Fistulas in Crohn’s Disease

While it may not be possible to completely prevent fistulas in Crohn’s disease, certain measures can help reduce the risk of their formation:

How can patients reduce the risk of developing fistulas?

To minimize the chances of fistula development, patients with Crohn’s disease should:

  • Adhere to prescribed treatment plans to manage inflammation
  • Maintain good hygiene, especially in the perianal area
  • Avoid straining during bowel movements
  • Report any new symptoms or changes in their condition to their healthcare provider promptly
  • Attend regular check-ups to monitor disease activity and detect potential complications early

By working closely with their healthcare team and following these preventive measures, patients can potentially reduce their risk of developing fistulas or catch them early if they do occur.

Important Questions to Ask Your Doctor About Crohn’s Fistulas

When dealing with fistulas related to Crohn’s disease, it’s essential to maintain open communication with your healthcare provider. Here are some key questions patients should consider asking their doctor:

  1. What type of fistula do I have, and how severe is it?
  2. What are my treatment options, and which do you recommend for my specific case?
  3. What are the potential risks and side effects of the recommended treatment?
  4. How long can I expect the healing process to take?
  5. Will I need to make any lifestyle changes during or after treatment?
  6. What signs should I watch for that might indicate complications or recurrence?
  7. How often will I need follow-up appointments, and what will they involve?
  8. Are there any new or experimental treatments that might be suitable for my condition?
  9. How can I best manage my overall Crohn’s disease to reduce the risk of future fistulas?
  10. What support resources are available for patients dealing with Crohn’s disease and fistulas?

By asking these questions, patients can gain a better understanding of their condition and actively participate in their treatment decisions. This collaborative approach can lead to improved outcomes and better quality of life for those living with Crohn’s disease and its complications.

Living with Crohn’s Disease and Fistulas: Coping Strategies and Support

Dealing with fistulas as a complication of Crohn’s disease can be challenging both physically and emotionally. Developing effective coping strategies and seeking support can significantly improve a patient’s quality of life and ability to manage their condition.

What are some effective ways to cope with Crohn’s disease and fistulas?

Patients can employ several strategies to better cope with their condition:

  • Education: Learn as much as possible about Crohn’s disease and fistulas to feel more in control of the condition.
  • Stress management: Practice relaxation techniques such as meditation, deep breathing, or yoga to reduce stress, which can exacerbate symptoms.
  • Dietary adjustments: Work with a nutritionist to develop a diet plan that minimizes digestive discomfort and supports overall health.
  • Regular exercise: Engage in appropriate physical activities to improve overall well-being and reduce stress.
  • Join support groups: Connect with others who have similar experiences to share advice and emotional support.
  • Seek mental health support: Consider talking to a therapist or counselor to address any emotional challenges related to living with a chronic condition.

By implementing these coping strategies, patients can improve their ability to manage the physical and emotional aspects of living with Crohn’s disease and fistulas.

Where can patients find support and resources?

Several organizations and resources are available to provide support and information for individuals dealing with Crohn’s disease and fistulas:

  • Crohn’s & Colitis Foundation: Offers educational materials, support groups, and research updates.
  • Online forums and communities: Platforms like HealthUnlocked and Reddit have active communities for IBD patients.
  • Local support groups: Many hospitals and community centers host in-person support groups for individuals with Crohn’s disease.
  • Patient advocacy organizations: Groups like the Intestinal Disease Education and Awareness Society (IDEAS) provide resources and advocate for patients.
  • Social media: Following reputable organizations and healthcare providers on platforms like Twitter and Facebook can provide up-to-date information and community support.

Utilizing these resources can help patients feel more supported and informed as they navigate life with Crohn’s disease and its complications.

Advances in Fistula Research and Future Treatment Prospects

The field of Crohn’s disease and fistula treatment is continuously evolving, with researchers exploring new approaches to improve patient outcomes. Understanding these advancements can provide hope and insight into future treatment possibilities.

What are some promising areas of research for fistula treatment?

Several areas of research show potential for improving fistula treatment in Crohn’s disease:

  • Biologics: Development of new and more targeted biological therapies to reduce inflammation and promote healing.
  • Tissue engineering: Advancements in creating bioengineered tissues to repair fistula tracts.
  • Nanotechnology: Exploration of nanoparticle-based drug delivery systems for more effective local treatment of fistulas.
  • Microbiome manipulation: Investigating the role of gut bacteria in fistula formation and potential probiotic treatments.
  • Gene therapy: Studying genetic factors involved in fistula development to develop targeted therapies.
  • Combination therapies: Researching the most effective combinations of surgical and medical treatments for complex fistulas.

These research areas hold promise for developing more effective and less invasive treatments for Crohn’s disease fistulas in the future.

How might future treatments improve outcomes for patients with Crohn’s fistulas?

Future advancements in fistula treatment could potentially lead to several improvements:

  • Higher success rates in fistula closure and healing
  • Reduced recurrence rates of fistulas
  • Minimally invasive treatment options with faster recovery times
  • Personalized treatment approaches based on individual patient characteristics
  • Improved quality of life for patients with chronic or recurrent fistulas
  • Better long-term management of Crohn’s disease to prevent fistula formation

As research progresses, patients with Crohn’s disease and fistulas can look forward to potentially more effective and tailored treatment options in the coming years.

Fistulas and Crohn’s Disease: What to Know

Written by Hallie Levine

  • What Are Fistulas?
  • What Are the Types of Fistulas?
  • How Are Fistulas Treated?
  • What Is the Follow-Up Care After a Fistula?
  • Can Fistulas Be Prevented?
  • What Questions Should I Ask My Doctor About My Fistula?
  • More

Fistulas are small tunnels that form between two organs or an organ and the surface of your body. They’re due to inflammation from your Crohn’s disease, which causes sores to form on your intestinal wall. In Crohn’s disease, they often form in your butt. They can also form in your intestines, bladder, or straight through the bowel wall to your skin surface. You may even develop a fistula between your butt and vagina.

They sound scary but are very common with Crohn’s disease. In fact, it’s estimated that up to half of all adults with this condition will eventually have a fistula.

There are several types of fistulas you may get if you have Crohn’s disease. They include:

  • Anal fistula. This is the most common type of fistula among patients with Crohn’s disease. Symptoms include a painful bump or boil around your butt. You may see an open skin abscess that drains fluid or poop.
  • Bowel-to-bladder fistula. You may have frequent urinary tract infections. It may hurt to pee, and your urine may look cloudy or have blood in it.
  • Bowel-to-vagina fistula. You may notice that you pass gas or poop through your vagina.
  • Bowel-to-skin fistula. These often occur on your stomach. The contents of your gut leak out, which hurts your skin and causes it to become very red and sore. You are also more at risk of a skin infection.
  • Bowel-to-bowel fistula. This is when different parts of your gut link together, like your small and large intestines. It can cause diarrhea and even malnutrition and dehydration due to loss of nutrients.

Fistulas are usually diagnosed through a physical exam, as well as imaging tests such as CT scans, ultrasounds, and MRIs.

If you have a simple anal fistula, your doctor may recommend that you treat it with antibiotics, plus any treatment you already take for your Crohn’s disease, such as an anti-tumor necrosis factor agent like infliximab. But if you have a more complex anal fistula, or another type of fistula, like a bladder or vaginal one, you may need surgery, especially as these types of fistulas tend to pass through muscle layers or organs. Options include:

A seton. This is a thin surgical cord that’s put into the fistula to help drain infection and allow it to heal. It’s left in for several weeks and removed once the fistula starts to heal. Studies show that this treatment is most effective when it’s done at the same time as anti-TNF therapy. It can feel funny – like rubber bands hanging out of your butt – but after a few days, you won’t notice that the cord is there.

A medical plug. This is a cone-shaped plug made from animal tissue that blocks the internal opening of the fistula.

Fistulotomy. The fistula is cut open (the way you would a cardboard tube) and flattened out. It can take anywhere from a week to several months to heal.

Ligation of the intersphincteric tract (LIFT). This is for more complex anal fistulas. A cut is made in the skin above the fistula, and the sphincter muscles are moved apart. The fistula is then sealed at both ends so poop doesn’t get into it.

Medical glue. This is a nonsurgical option, where your doctor injects a glue into your fistula while you’re under general anesthetic. This helps seal the fistula, so that it heals. It’s thought to be less effective than a fistulotomy, but it’s less invasive.

You may need an ileostomy while your body heals from fistula surgery. This is a procedure where your small intestine is brought up through the abdominal wall so that your poop can leave your body through a surgically created hole known as a stoma. Your poop will be collected in an ostomy bag. This is temporary, but you may need more surgery to make sure your intestine has fully closed where the fistula was.

Researchers are also studying an experimental treatment for fistulas using stem cells. These are injected directly into the fistula. The thought is they are able to repair damaged cells and ramp down some of the inflammation associated with Crohn’s disease. A 2021 review published in the journal Stem Cell Research & Therapy looked at 29 studies and concluded that patients given stem cell injections had higher rates of healing than those given a placebo. But more research is necessary to determine how helpful it really is.

Most fistulas respond well to surgery. Your doctor may recommend that you soak the area in a warm bath, or sitz bath, and that you take stool softeners or laxatives for a week. This helps keep your poop soft, so it doesn’t irritate the area.

Your doctor may also prescribe pain pills for you to take for a few days after surgery. Local anesthetics like lidocaine can also temporarily relieve discomfort.

You’ll be followed closely to make sure that the fistula doesn’t return and that new ones don’t develop.

The best way to help prevent a fistula is to be on a therapy that helps keep your Crohn’s disease under control. A 2020 study published in JAMA Network Open, for example, found that children and young adults with Crohn’s disease who used nonsteroid therapies such as azathioprine or methotrexate (both immune system suppressors) or the anti-TNF drug infliximab were nearly 60% less likely to have fistulas than those who didn’t. If they did go on to develop one, they were 55% less likely to need ostomy surgery. This is especially important because kids with Crohn’s disease are almost twice as likely to get fistulas as adults, possibly because the condition in this age group tends to be more aggressive.

If you have a fistula and your doctor recommends surgery, it’s important to talk to them about the following:

  • Surgery options
  • Pre-surgery prep
  • Potential complications
  • Restrictions after surgery
  • Recovery time
  • How the surgery will affect your diet and bowel movements
  • Whether you will need an ileostomy, and if you do, how to care for your ostomy pouch
  • Home supplies
  • Follow-up care

While fistulas are a common complication of Crohn’s disease, the good news is there are effective treatments out there to both remove them and prevent them from returning.

Top Picks

Fistula Removal | Crohn’s & Colitis Foundation

Fistulas require immediate medical attention to prevent serious infections or other problems from developing. Treatment options include medications, surgery, or both.


Fistulas form when inflammation causes sores, or ulcers, to form on the inside wall of the intestine or nearby organs. Those ulcers can extend through the entire thickness of the bowel wall, creating a tunnel to drain the pus from the infected area.  An abcess, or a collection of pus, can also cause a fistula to form.

The most common types of fistulas in Crohn’s disease patients form between two parts of the intestine, between the intestine and another organ, such as the bladder or vagina, or through to the skin surface. Women with Crohn’s disease can also develop a fistula between the rectum and vagina, which may be difficult to treat. Surgical treatment depends on individual circumstances.

Fistulas sound scary, but they are treatable. About 35 to 50 percent of adults with Crohn’s disease will develop a fistula at some point.

Fistula Symptoms

Patients can have different symptoms depending on which parts of the body are connected by the fistula.

Fistula between the small and large intestine

Fistula between the intestine and the bladder

  • Urinary tract infection

  • Burning with urination

  • Cloudy urine or blood in the urine

Fistula between the intestine and the vagina

Fistula from the intestine to the skin

What You Should Know About Fistula Removal

While some fistulas can be treated with antibiotics and other medication, fistula removal surgery may be necessary if the infection doesn’t respond to medication or if the fistula is severe enough to require emergency surgery.

There are several surgical options to treat fistulas, including:

  • A medical plug to close the fistula and allow it to heal

  • A thin surgical cord, called a seton, placed into the fistula to help drain any infection and allow it to heal

  • Opening up the fistula with an incision along its length to allow it to heal

  • Medical glue to close the fistula

Ileostomy

Your stool will sometimes need to be diverted from the intestine while its healing from fistula surgery. This is done with an ileostomy, a procedure that brings the small intestine up through the abdominal wall so that waste can leave your body through a surgically created hole called a stoma.

  • Feces are collected outside your body in an ostomy pouching system.

  • An ileostomy is often used as a temporary solution to allow healing.

  • You may require additional surgery to ensure the intestine is closed at the fistula location.

Anal Fistula Removal

An anal fistula is a tunnel that forms between the inside of the anus and the skin surrounding the anus. This is often repaired with a surgical procedure called a fistulotomy.

  • The primary goal is to repair the fistula without damaging the anal sphincter muscles, which are necessary for fecal continence, the ability to hold fecal material in your rectum.

  • Recurrence rates for anal fistulas are fairly low after surgery.

  • Complications are rare and there is typically little impact on fecal continence.

Ask Your Doctor

  • What are my options for fistula removal?

  • What preparations will I need to make before my fistula removal surgery?

  • What are the potential complications from surgery?

  • What kind of restrictions will I have after my surgery?

  • How long will it take me to recover from fistula removal surgery?

  • How will the surgery affect my diet and bowel movements?

  • If I require an ileostomy, how do I care for my ostomy pouch and keep it clean?

  • What supplies will I need at home?

  • Will I need additional surgeries?

Related Resources

Brochure

Surgery for Crohn’s Disease and Ulcerative Colitis.

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A brochure with information and resources about the different types of GI surgery.